Achmad Farajallah | Resume Metode Ekstraksi mtDNA Vendi Eko Susilo G352110071 Copyright Achmad Farajallah
[email protected] http://achamad.staff.ipb.ac.id/resume-metode-ekstraksi-mtdna/
Resume Metode Ekstraksi mtDNA Vendi Eko Susilo G352110071 Resume Metode Ekstraksi mtDNA oleh Vendi Eko Susilo G352110071
No 1
Nama Hewan Drosophila
Sample whole body?Adult drosophila Hair
Metode alkaline lysis
Genome Target mtDNA
2 3
collected duringautopsy by Dr. William (human) yeast species
the silica/guanidine thiocyanate (GuSCN)
total genome
cells
1) boiling, 2) glass bead disruption, and3) a commercially available kit (Gen Toru-Kun Kit/GenTLE) use a single extractions step with chelex as a extraction medium
total genome
4
Hornbill
Feathers
5
Insect
eggs
QIAamp® columns (Vallencia, CA)
haploid genome, mtDNA
6
cow
fecal
RBB+C
?
7
bear
blood
Qiam kit
total genome
8
chicken, goat, cattle and pigs
Fecal
QIAamp DNA stool purification kit
total genome, include gut bacteri consortium
9
Human
Human fecal
- UltraClean Fecal DNA extraction kit- ExtractMaster Fecal DNA extraction kit
total genome, include gut bacteri consortium
10
human
semen
FTA technology
haploid genome, mtDNA
total genome
Sumber:
1. Rapid Isolation Method of Animal Mitochondrial DNA by the Alkaline Lysis Procedure. Koichiro Tamura 1 and Tadashi Aotsuka 1': Biochemical Genetics, Vol. 26, Nos. 11/12, 1988 2. A Silica-Based Mitochondrial DNA Extraction Method Applied to Forensic Hair Shafts and Teeth. Lori E. Baker,1 M.A.; William F. McCormick,1 M.S., M.D.; and Karla J. Matteson,2 Ph.D. (2001) 3. Comparison of Different Methods for Extraction of Mitochondrial DNA from Human Pathogenic Yeasts. Yohko Yamada*, Koichi Makimura1,2, Hossain
page 1 / 6
Achmad Farajallah | Resume Metode Ekstraksi mtDNA Vendi Eko Susilo G352110071 Copyright Achmad Farajallah
[email protected] http://achamad.staff.ipb.ac.id/resume-metode-ekstraksi-mtdna/
4.
5.
6.
7.
8.
9.
10.
Mirhendi1, Kumiko Ueda1, Yayoi Nishiyama1,2, Hideyo Yamaguchi1,2 and Masako Osumi; Jpn. J. Infect. Dis., 55, 122-125, 2002 DNA extraction, amplification and direct sequensing from horbill feathers. Philip A Morina, Jeane Messier, and David S woodroff; J.Sci.Soc. Thailand, 20 (1994) 31-34 Human and Insect Mitochondrial DNA Analysis from Maggots. Jeffrey D. Wells, Ph.D.; Francesco Introna, Jr., M.D.; Giancarlo Di Vella, Ph.D., M.D.; Carlo P. Campobasso, M.D.; Jack Hayes, Ph.D.; and Felix A. H. Sperling, Ph.D ; JOURNAL OF FORENSIC SCIENCES (2001). Improved extraction of PCR-quality community DNA from digesta and fecal samples. Zhongtang Yu and Mark Morrison; BioTechniques 36:808-812 (May 2004) Techniques for application of faecal DNA methods to field studies of Ursids. S. K. WASSER, C. S. HOUSTON, G. M. KOEHLER,* G. G. CADD and S. R. FAIN; Molecular Ecology 1997, 6, 1091–1097 A rapid and low-cost DNA extraction method for isolating Escherichia coli DNA from animal stools. Barnard, T. G.1*, Robertson, C. A.1, Jagals, P.1 and Potgieter, N.2; African Journal of Biotechnology Vol. 10(8), pp. 1485-1490, 21 February, 2011 Comparison of methods for the extraction of bacterial DNA from human faecal samples for analysis by real-time PCR. E.A Nelson1, 2, E.A Palombo1, and S.R Knowles2; (2010). 10. Application of FTA technology to extraction of sperm DNA from mixed body fluids containing semen. Yoshihiko Fujita, Shin-ichi Kubo; Y. Fujita, S.-i. Kubo / Legal Medicine 8 (2006) 43–47
Resume Metode Ekstraksi mtDNA oleh Vendi Eko Susilo
page 2 / 6
Achmad Farajallah | Resume Metode Ekstraksi mtDNA Vendi Eko Susilo G352110071 Copyright Achmad Farajallah
[email protected] http://achamad.staff.ipb.ac.id/resume-metode-ekstraksi-mtdna/ G352110071
No 1
Nama Hewan Drosophila
Sample whole body?Adult drosophila Hair
Metode alkaline lysis
Genome Target mtDNA
2 3
collected duringautopsy by Dr. William (human) yeast species
the silica/guanidine thiocyanate (GuSCN)
total genome
cells
1) boiling, 2) glass bead disruption, and3) a commercially available kit (Gen Toru-Kun Kit/GenTLE) use a single extractions step with chelex as a extraction medium
total genome
4
Hornbill
Feathers
5
Insect
eggs
QIAamp® columns (Vallencia, CA)
haploid genome, mtDNA
6
cow
fecal
RBB+C
?
7
bear
blood
Qiam kit
total genome
8
chicken, goat, cattle and pigs
Fecal
QIAamp DNA stool purification kit
total genome, include gut bac consortium
9
Human
Human fecal
- UltraClean Fecal DNA extraction kit- ExtractMaster Fecal DNA extraction kit
total genome, include gut bac consortium
10
human
semen
FTA technology
haploid genome, mtDNA
total genome
Sumber:
1. Rapid Isolation Method of Animal Mitochondrial DNA by the Alkaline Lysis Procedure. Koichiro Tamura 1 and Tadashi Aotsuka 1': Biochemical Genetics, Vol. 26, Nos. 11/12, 1988 2. A Silica-Based Mitochondrial DNA Extraction Method Applied to Forensic Hair Shafts and Teeth. Lori E. Baker,1 M.A.; William F. McCormick,1 M.S., M.D.; and Karla J. Matteson,2 Ph.D. (2001) 3. Comparison of Different Methods for Extraction of Mitochondrial DNA from Human Pathogenic Yeasts. Yohko Yamada*, Koichi Makimura1,2, Hossain Mirhendi1, Kumiko Ueda1, Yayoi Nishiyama1,2, Hideyo Yamaguchi1,2 and Masako Osumi; Jpn. J. Infect. Dis., 55, 122-125, 2002 4. DNA extraction, amplification and direct sequensing from horbill feathers. Philip A Morina, Jeane Messier, and David S
page 3 / 6
Achmad Farajallah | Resume Metode Ekstraksi mtDNA Vendi Eko Susilo G352110071 Copyright Achmad Farajallah
[email protected] http://achamad.staff.ipb.ac.id/resume-metode-ekstraksi-mtdna/
5.
6.
7.
8.
9.
10.
woodroff; J.Sci.Soc. Thailand, 20 (1994) 31-34 Human and Insect Mitochondrial DNA Analysis from Maggots. Jeffrey D. Wells, Ph.D.; Francesco Introna, Jr., M.D.; Giancarlo Di Vella, Ph.D., M.D.; Carlo P. Campobasso, M.D.; Jack Hayes, Ph.D.; and Felix A. H. Sperling, Ph.D ; JOURNAL OF FORENSIC SCIENCES (2001). Improved extraction of PCR-quality community DNA from digesta and fecal samples. Zhongtang Yu and Mark Morrison; BioTechniques 36:808-812 (May 2004) Techniques for application of faecal DNA methods to field studies of Ursids. S. K. WASSER, C. S. HOUSTON, G. M. KOEHLER,* G. G. CADD and S. R. FAIN; Molecular Ecology 1997, 6, 1091–1097 A rapid and low-cost DNA extraction method for isolating Escherichia coli DNA from animal stools. Barnard, T. G.1*, Robertson, C. A.1, Jagals, P.1 and Potgieter, N.2; African Journal of Biotechnology Vol. 10(8), pp. 1485-1490, 21 February, 2011 Comparison of methods for the extraction of bacterial DNA from human faecal samples for analysis by real-time PCR. E.A Nelson1, 2, E.A Palombo1, and S.R Knowles2; (2010). 10. Application of FTA technology to extraction of sperm DNA from mixed body fluids containing semen. Yoshihiko Fujita, Shin-ichi Kubo; Y. Fujita, S.-i. Kubo / Legal Medicine 8 (2006) 43–47
Resume Metode Ekstraksi mtDNA oleh Vendi Eko Susilo G352110071
page 4 / 6
Achmad Farajallah | Resume Metode Ekstraksi mtDNA Vendi Eko Susilo G352110071 Copyright Achmad Farajallah
[email protected] http://achamad.staff.ipb.ac.id/resume-metode-ekstraksi-mtdna/ No 1
Nama Hewan Drosophila
Sample whole body?Adult drosophila Hair
Metode alkaline lysis
Genome Target mtDNA
2 3
collected duringautopsy by Dr. William (human) yeast species
the silica/guanidine thiocyanate (GuSCN)
total genome
cells
1) boiling, 2) glass bead disruption, and3) a commercially available kit (Gen Toru-Kun Kit/GenTLE) use a single extractions step with chelex as a extraction medium
total genome
4
Hornbill
Feathers
5
Insect
eggs
QIAamp® columns (Vallencia, CA)
haploid genome, mtDNA
6
cow
fecal
RBB+C
?
7
bear
blood
Qiam kit
total genome
8
chicken, goat, cattle and pigs
Fecal
QIAamp DNA stool purification kit
total genome, include gut consortium
9
Human
Human fecal
- UltraClean Fecal DNA extraction kit- ExtractMaster Fecal DNA extraction kit
total genome, include gut consortium
10
human
semen
FTA technology
haploid genome, mtDNA
total genome
Sumber:
1. Rapid Isolation Method of Animal Mitochondrial DNA by the Alkaline Lysis Procedure. Koichiro Tamura 1 and Tadashi Aotsuka 1': Biochemical Genetics, Vol. 26, Nos. 11/12, 1988 2. A Silica-Based Mitochondrial DNA Extraction Method Applied to Forensic Hair Shafts and Teeth. Lori E. Baker,1 M.A.; William F. McCormick,1 M.S., M.D.; and Karla J. Matteson,2 Ph.D. (2001) 3. Comparison of Different Methods for Extraction of Mitochondrial DNA from Human Pathogenic Yeasts. Yohko Yamada*, Koichi Makimura1,2, Hossain Mirhendi1, Kumiko Ueda1, Yayoi Nishiyama1,2, Hideyo Yamaguchi1,2 and Masako Osumi; Jpn. J. Infect. Dis., 55, 122-125, 2002 4. DNA extraction, amplification and direct sequensing from horbill feathers. Philip A Morina, Jeane Messier, and David S woodroff; J.Sci.Soc. Thailand, 20 (1994) 31-34 5. Human and Insect Mitochondrial DNA Analysis from Maggots. Jeffrey D. Wells, Ph.D.; Francesco Introna, Jr., M.D.; Giancarlo Di Vella, Ph.D., M.D.; Carlo P. Campobasso, M.D.; Jack Hayes, Ph.D.;
page 5 / 6
Achmad Farajallah | Resume Metode Ekstraksi mtDNA Vendi Eko Susilo G352110071 Copyright Achmad Farajallah
[email protected] http://achamad.staff.ipb.ac.id/resume-metode-ekstraksi-mtdna/
6.
7.
8.
9.
10.
and Felix A. H. Sperling, Ph.D ; JOURNAL OF FORENSIC SCIENCES (2001). Improved extraction of PCR-quality community DNA from digesta and fecal samples. Zhongtang Yu and Mark Morrison; BioTechniques 36:808-812 (May 2004) Techniques for application of faecal DNA methods to field studies of Ursids. S. K. WASSER, C. S. HOUSTON, G. M. KOEHLER,* G. G. CADD and S. R. FAIN; Molecular Ecology 1997, 6, 1091–1097 A rapid and low-cost DNA extraction method for isolating Escherichia coli DNA from animal stools. Barnard, T. G.1*, Robertson, C. A.1, Jagals, P.1 and Potgieter, N.2; African Journal of Biotechnology Vol. 10(8), pp. 1485-1490, 21 February, 2011 Comparison of methods for the extraction of bacterial DNA from human faecal samples for analysis by real-time PCR. E.A Nelson1, 2, E.A Palombo1, and S.R Knowles2; (2010). 10. Application of FTA technology to extraction of sperm DNA from mixed body fluids containing semen. Yoshihiko Fujita, Shin-ichi Kubo; Y. Fujita, S.-i. Kubo / Legal Medicine 8 (2006) 43–47
