ADLN - Perpustakaan Universitas Airlangga
DAFTAR PUSTAKA
Aditama TY. Tuberkulosis Diagnosis, Terapi dan Masalahnya. Edisi V. Jakarta: Yayasan Penerbitan Ikatan Dokter Indonesia, 2002. Alsagaff H, Mukti HA, 2002. Tuberkulosis Paru. In: Alsagaff H, Mukti HA eds. Dasar-dasar ilmu Penyakit Paru. Surabaya: Airlangga University Press hal 73-109. Alsagaff H, Mukty A., 2006. Dasar-dasar Ilmu Penyakit Paru. Surabaya: Airlangga University Press American Thoracic Society, 2000. Diagnostics Standards and Classification of Tuberculosis in Adults and Children. Am J Respir Crit Care Med 161: 37695 Amita J, Vandana T, Guleria RS, Verma RK, 2002. Qualitative Evaluation of Mycobacterial DNA Extraction Protocols for Polymerase Chain Reaction. Molecular Biology Today 3:43-50 Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhi K, 1990. Current protocols in moleculer biology. Vol. 2. New York: Greene Publishing Associates and Wiley-Interscience, John Wiley & Sons, 15.0315.1.7. Boddinghaus I, Rogall T, Flohr T, Blocker H, Bottger EC, 1990. Detection and identification of Mycobacteria by amplification of rRNA. J. Clin. Microbiol. 28: 1751-1759. Boom R, CJA Sol, MMM Salimans, et al. Rapid and simple method for purification of nucleic acid. J. Clin Microbiol 1990; 28: 495-503.
TESIS
AKURASI METODE AMPLIFIKASI ASAM NUKLEAT DENGAN TARGET ...
YUDITA WULANDARI
ADLN - Perpustakaan Universitas Airlangga
Brooks GF, Butel JS, Morse SA, Caroll KC, 2007. Mycobacteria. In: Jawetz, Melnick
&
Adelberg’s
Medical
Microbiology,
Lange
Medical
Book/McGraw-Hill. Inc; USA, 24th edition. Crofton J, Horner N, Miller F, 1998. Tuberkulosis Klinik. Jakarta: Widya Medika, hal: 33-40 Damle
AS,
Kaundiya
DV,
1986.
Comparison
of
three
methods
of
decontamination of sputum for mycobacterial culture. Indian Journal of Tuberculosis. July; 33(3): 124-8 Departemen
Kesehatan
RI,
2008.
Pedoman
Nasional
Penanggulangan
Tuberkulosis, cetakan ke 8. Jakarta. Donnabella V, F. Martiniuk, D. Kinney, M. Bacerdo, S. Bonk, B. Hanna, W. N. Rom, 1994. Isolation of the gene for the beta subunit of RNA polymerase from rifampicin-resistant Mycobacterium tuberculosis and identification of new mutations. Am. J. Respir. Cell Mol. Biol. 11:639–643. Eddy Soewandojo S, 2002. Aplikasi Teknik Polymerase Chain Reaction (PCR) untuk Diagnosis Penyakit Infeksi. Dalam: Seri Penyakit Tropik Infeksi: Perkembangan Terkini Dalam Pengelolaan Beberapa Penyakit Tropik Infeksi. Surabaya, Airlangga University Press, 2002:142-151 Filho LDA, Celemann WMR, Barreto CEN, Kritski AL, Fonseca Ls, 2002. Sensitivity of Amplicor MTB on direct detection of Mycobacterium tuberculosis in smear-negative specimens from outpatients in Rio de Janeiro. Brazilian J Microbiol; 33: 163-5
TESIS
AKURASI METODE AMPLIFIKASI ASAM NUKLEAT DENGAN TARGET ...
YUDITA WULANDARI
ADLN - Perpustakaan Universitas Airlangga
Forbes BA, Sahm DF, Weissfeld AS, 2005. Laboratory cultivation and isolation of bacteria. In: Bailey and Scott’s Diagnostic Microbiology. 11th ed. Mosby. St. Louis, pp. 133-146 Fries JWU, Patel RJ, Piessehn WF, Wirth DE, 1991. Detection of untreated mycobacteria by using polymerase chain reaction and specific DNA probes. J. Clin. Microbiol. 29:1744-1747 Garay SM, 2004. Pulmonary Tuberculosis. In: Rom WN, Garay SM, eds. Tuberculosis, Philadelphia: Lippincot Williams Wilkins, p. 345-50 Hance AJ, Grandchamp B, Vincent-Levy-Frebault V, Lecossier D, Rauzier J. Bocart D, and Gicquel B. Detection and identification of mycobacteria by amplification of mycobacterial DNA. Mol Microbiol 3: 843-849 Hanna BA, 2004. Laboratory Diagnosis. In: Rom WN, Garay SM, eds. Tuberculosis, Philadelphia: Lippincot Williams Wilkins, p. 165 Hansell DM, Armstrong P, Lynch DA, McAdams HP, 2005. Infections of the lungs and pleura. In: Imaging of diseases of the chest, fourth edition, Mosby, pg: 208-24 Heep M., U. Rieger, D. Beck, N. Lehn, 2000. Mutations in the beginning of the rpoB gene can induce resistance to rifamycins in both Helicobacter pylori and Mycobacterium tuberculosis. Antimicrob. Agents Chemother. 44:1075– 1077. Hong SK, Kim BJ, Yun YJ, Lee KH, Kim EC, Park EM, Park YG, Bai GH, Kook YH, 2004. Identification of Mycobacterium tuberculosis by PCR-linked reverse hybridization using specific rpoB oligonucleotide probes. Journal of Microbiological Methods 59, 71-19.
TESIS
AKURASI METODE AMPLIFIKASI ASAM NUKLEAT DENGAN TARGET ...
YUDITA WULANDARI
ADLN - Perpustakaan Universitas Airlangga
Hofmann-Thiel S, Turaev L, Hoffmann H, 2010. Evaluation of the hyplex.sup.[R] .sup.TBC PCR test for detection of Mycobacterium tuberculosis complex in clinical samples.(Research article)(Report). BMC Microbiology, p.95 I Wayan Agus Putra, Eddy Surjanto, Suradi, Tjandra Yoga Aditama, 2008. Nilai Diagnostik Pemeriksaan Reaksi Rantai Polimerase Pada Tuberkulosis Paru Sputum Basil Tahan Asam Negatif. J Respir Indo Vol 28; no. 3 Jasaputra DK, Onggowidjaja P, Soeng S, 2005. Akurasi Deteksi Mycobacterium tuberculosis dengan Teknik PCR menggunakan “Primer X” dibandingkan dengan Pemeriksaan Mikroskopik (BTA) dan Kultur Sputum Penderita dengan Gejala Tuberkulosis Paru. JKM Vol.5, No 1, Juli, hal 7-13. John M Grange, 1988. Mycobacteria and Human Disease. Great Britain; Edward Arnold pg: 50 Jou R, Chen HY, Chiang CY, Yu MC, Su IJ, 2005. Genetic Diversity of Multidrug-Resistant Mycobacterium tuberculosis Isolates and Identification of 11 Novel rpoB Alleles in Taiwan. Journal of Clinical Microbiology, p. 1390-94. Katoch VM, Sharma VD, 1997. Advances in the diagnosis of mycobacterial diseases. Indian J Med Microbiol 15:49-55. Katoch VM, 2003. Advances in Molecular Diagnosis of Tuberculosis. MJAFI 59: 182-186. Kent L, McHugh TD, Billington O, Dale JW, Gillespie SH, 1995. Demonstration of homolog between IS6110 of Mycobacterium tuberculosis and DNAs of other Mycobacterium spp. J Clin Microbiol. 33: 2290-2293.
TESIS
AKURASI METODE AMPLIFIKASI ASAM NUKLEAT DENGAN TARGET ...
YUDITA WULANDARI
ADLN - Perpustakaan Universitas Airlangga
Khorsidhi A, Rohani M, Moniri R, Torfeh M, 2009. Comparison of culture and microscopic methods by PCR for detection of Mycobacterium tuberculosis in sputum. Iranian Journal of Clinical Infectious Diseases; 4(4): 228-232 Kim BJ, Lee SH, Lyu MA, Kim SJ, Bai GH, Kim SJ, Chae GT, Kim EC, Cha CY, Kook YH, 1999. Identification of Mycobacterial species by Comparative Sequence Analysis of the RNA Polymerase Gene (rpoB). Journal of Clinical Microbiology, p.1714-1720 Kim BJ, Hong SK, Lee KH, Yun YJ, Kim EC, Park YG, Bai GH, Kook YH, 2004.
Differential
Identification
of
Mycobacterium
Complex
and
Nontuberculous Mycobacteria by Duplex PCR assay Using the RNA Polymerase Gene (rpoB). Journal of Clinical Microbiology 42:1308-1312. Kocagoz T, Yilmaz E, Ozkara S, Kocagoz S, Hayran M, Sachedeva M, Chambers HF, 1993. Detection of Mycobacterium tuberculosis in Sputum Samples by Polymerase Chain Reaction Using a Simplified Procedure. Journal of Clinical Microbiology, June, p 1435-1438 Kolk AH, Schuitema AR, Kuijper S, Van Leeuwen J, Hermans PWM, Van Embden JDA, Hartskeeri RA, 1992. Detection of Mycobacterium tuberculosis in clinical samples by using polymerase chain reaction and a non radioactive detection system. J. Clin. Microbiol. 30:2567-2575 Kolk AHJ, Kox LFF, Rienthong D, Miranda AM, Udomsantisuk N, Ellis K, van Leeuwen J, Kuijper S. Detection of Mycobacterium tuberculosis in clinical samples
using
the
polymerase
chain
reaction:avoiding
amplicon
contamination. In: Radionuclides in Molecular Technology for Diagnosis of
TESIS
AKURASI METODE AMPLIFIKASI ASAM NUKLEAT DENGAN TARGET ...
YUDITA WULANDARI
ADLN - Perpustakaan Universitas Airlangga
Communicable Disease. Tharavanij S, and Khusmith S (eds). Vienna, Austria: International Atomic Energy Agency, IAEA-Tec-Doc-748; 83-92 Lee H, Park HJ, Cho SN, Bai GH, Kim SJ, 2000. Species Identification of Mycobacteria by PCR-Restriction Fragment Length Polymorphism of the rpoB Gene. Journal of Clinical Microbiology, p.2966-2971. Lee H, Bang HE, Bai GH, Cho SN, 2003. Novel Polymorphic Region of the rpoB Gene Containing Mycobacterium Spesies-Specific Sequences and Its Use in Identification of Mycobacteria. Journal of Clinical Microbiology, p 221318. Magdalena J, Vachee A, Supply P, Locht C, 1998. Identification of a New DNA Region Specific for Members of Mycobacterium tuberculosis Complex. Journal of Clinical Microbiology 36:937-943. Maria Lina Rosilawati, 1998. Deteksi Mycobacterium Tuberculosis Dengan Reaksi Berantai Polimerase ("Polymerase Chain Reactions PCR). Tesis, Universitas Indonesia. Mertaniasih NM, Wiqoyah N, Kuntaman, Wahyunitisari MR, 2010. Metode Polymerase Chain Reaction (PCR) Regio Gen gyr B-Mycobacterium tuberculosis untuk Penegakkan Diagnosis Tuberkulosis secara Akurat dan Cepat. Mokkadas E, Ahmad S, 2007. Development and Evaluation of a Multiplex PCR for Rapid Detection and Differentiation of Mycobacterium tuberculosis Complex Members from Non-Tuberculous Mycobacteria. Jpn.J.Infect.Dis., 60: 140-144.
TESIS
AKURASI METODE AMPLIFIKASI ASAM NUKLEAT DENGAN TARGET ...
YUDITA WULANDARI
ADLN - Perpustakaan Universitas Airlangga
Muhammad Asa ad Maidin, 2005. Harapan dan tantangan aplikasi reaksi rantai polymerase (PCR) multipleks dalam pemberantasan TB paru di Indonesia. Suplemen 26: 19-28 Murray PR, Rosenthal KS, Kobayashi GS, Pfaller MA, 2002. Medical Microbiology. 4th ed. Mosby Inc, St. Louise, Missouri, USA.366-368 Nevio C, William AB, Adalbert L, 2001. Mycobacteria and Actinomycetes. In: Laboratory Diagnosis of Bacterial Infections, edited by Nevio Cimolai. USA, Marcel Dekker,Inc, 395-397. Pao CC, Yen TSB, You JB, Maa JS, Fiss EH, Chang CH, 1990. Detection and identification of Mycobacterium tuberculosis by DNA amplification. J Clin Microbiol 28:1877-1880. Parekh KM, Inamdar V, Jog A, Kar A, 2006. A Comparative Study of The Diagnosis of Pulmonary Tuberculosis Using Conventional Tools and Polymerase Chain Reaction. Indian Journal of Tuberculosis; 53:69-76 PDPI, 2006. Tuberkulosis: Pedoman Diagnosis dan Penatalaksanaan di Indonesia. Jakarta: Indah Offset Citra Grafika. Perkins MD, O’Brien RJ., 2006. New Diagnostics for Tuberculosis: An Essential Element for Global Control and Elimination. In: Reichman and Hershfield’s Tuberculosis, 3rd edition. Informa Health Care, USA, hal 1115 Persing DH, 1993. Target selection and optimization and amplification reaction. In: Diagnostic Molecular Microbiology. Persing DH, Smith TF, Tenover FC, White TJ (eds). Washington DC: American Society for Microbiology; 88-104
TESIS
AKURASI METODE AMPLIFIKASI ASAM NUKLEAT DENGAN TARGET ...
YUDITA WULANDARI
ADLN - Perpustakaan Universitas Airlangga
Petruska J, Goodman MF, Boosalis MS, Sowers LC, Cheong C, Tinoco Jr, 1988. Comparison between DNA melting thermodynamics and DNA polymerase fidelity. Proc Natl Acad Sci USA; 85: 6252-6256 Piere C, Lecossier D, Bonssongant Y, Boucart D, Joly V, Yeni P, Hence AJ, 1991. Use of reamplification protocol improve sensitivity of detection of Mycobacterium tuberculosis in clinical samples by amplification of DNA. J. Clin. Microbiol. 28: 712-717. Raviglione MC, Snider DE, Kochi Arata, 2005. Global Epidemiology of Tuberculosis JAMA 273 : 220-26 Rish JA, Eisenach KD, Cave MD, Reddy MV, Gangadharam PRJ, Bates JH, 1996. Polymerase chain reaction detection of Mycobacterium tuberculosis in formalin-fixed tissue. Am J Respir Crit Care Med.153: 1419-1423. Saiki RK, 1989. Optimization of polymerase chain reaction. In: Polymerase Chain Reaction. Ehrlich HA, Gibbs R, Kazazian Jr (eds). New York: Cold Spring Harbor Laoratory Press, 25-30. Sambrook J, Fritsch, Maniatis T, 1989. Molecular Cloning: A Laboratory Manual. Second edition. Cold Spring Harbour: Laboratory Press. Sjobring U, Mecklenburg M, Andersen AB, Miorner H, 1990. Polymerase chain reaction for detection of Mycobacterium tuberculosis. J Clin Microbiol. 28: 2200-2204. Sulistyaningsih E, 2007. Polymerase Chain Reaction (PCR): Era Baru Diagnosis dan Manajemen Penyakit Infeksi. Biomedis, Juni Vol. 1 No. 1 Surjanto E, Sutanto YS, 1997. Diagnostik Tuberkulosis Paru. Kumpulan Naskah Ilmiah Tuberkulosis pada Pertemuan Ilmiah Nasional PDPI, Palembang.
TESIS
AKURASI METODE AMPLIFIKASI ASAM NUKLEAT DENGAN TARGET ...
YUDITA WULANDARI
ADLN - Perpustakaan Universitas Airlangga
Taylor GR, 1996. Polymerase chain reaction: basic principles and automation. In PCR Volume I. A Practical Approach. McPherson MJ, Quirke P, Taylor GR (eds). New York: Oxford University Press Inc, 1996; 1-14. Team Laboratorium Mycobacterium tuberculosis, 2009. Modul Kultur dan Uji Kepekaan M. tuberculosis terhadap Obat Anti Tuberkulosis Lini Pertama.Balai Besar Laboratorium Kesehatan (BBLK), Surabaya. Thabrani Z, Aditama TY, Dawud Y, Jusuf A, Prasetyo S, Liuswa, 2001. Pemeriksaan
Reaksi
Rantai
Polimerase
dan
hubungannya
dengan
mikroskopis BTA dan biakan konvensional pada penderita tuberculosis paru di RSUP Persahabatan. J Respir Indon; 21: 56-65 Thiery D, Brisson-Noel A, Vincent-Levy-Frebault V, Nguyen S, Guesdon J, Gicquei B, 1990. Characterization of a Mycobacterium tuberculosis insertion sequence, IS6110, and its application in diagnosis. J. Clin. Microbiol. 28:2668-2673 Wards BJ, Collins DM, De Lisle GW, 1995. Detection of Mycobacterium bovis in tissues by polymerase chain reaction. Veterinary Microbiology, 43, 227-240 WHO, 2009. Global Report TB. Available from: www.tbindonesia.or.id Woolwine SC, Bishai WR, 2006. Overview of The Pathogenesis of Tuberculosis from a Cellular and Molecular Perspective. In: Reichman and Hershfield’s Tuberculosis, 3rd edition. Informa Health Care, USA, hal 101 World Health Organisation, 2009. WHO REPORT 2009. Global tuberculosis control. WHO, Geneva. World Health Organisation, 2010. WHO REPORT 2010. Global tuberculosis control. WHO, Geneva.
TESIS
AKURASI METODE AMPLIFIKASI ASAM NUKLEAT DENGAN TARGET ...
YUDITA WULANDARI
ADLN - Perpustakaan Universitas Airlangga
Zubaidah T, Aditama TY, Priyanti ZS, Bernida I. Diagnosis Tuberkulosis, 2003. In: Abdullah A, Patau MJ, Susilo HT, editor. Naskah Lengkap Pertemuan Ilmiah Khusus (PIK) X. FK Universitas Hasanuddin/Perjan RS Dr. Wahidin Sudirohusodo Makassar, hal: 139-44 Letak gen rpoB. Available from: http://genome.tbdb.org/annotation/genome/tbdb/GeneDetails.html?sp=S700 0000635248481
TESIS
AKURASI METODE AMPLIFIKASI ASAM NUKLEAT DENGAN TARGET ...
YUDITA WULANDARI